ORSL (DF0001047)

ORSL (Ori-enriched Sequence L), putative hAT DNA transposon

Description

ORSL shares ~200bp stretch of similarity with African Green Monkey origin of replication region. This repeat has been classified as a putative hAT transposon based on the 14bp TIRs and 8bp TSDs similar to other hAT transposons.

References

  1. Sequence similarities among monkey ori-enriched (ors) fragments.
    Rao BS, Zannis-Hadjopoulos M, Price GB, Reitman M, Martin RG;
    Gene 1990;87:233-242 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT

Hit Statistics

The model is 275 positions long. The average length of non-redundant hits to the model is 216. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 281 359 209 240
Homo sapiens 765 1297 733 1108

External Database Links

  • Repbase : ORSL [Requires Repbase registration]