ORSL (Ori-enriched Sequence L), putative hAT DNA transposon
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
ORSL shares ~200bp stretch of similarity with African Green Monkey origin of replication region. This repeat has been classified as a putative hAT transposon based on the 14bp TIRs and 8bp TSDs similar to other hAT transposons.
Sequence similarities among monkey ori-enriched (ors) fragments.
Rao BS, Zannis-Hadjopoulos M, Price GB, Reitman M, Martin RG;
Gene 1990;87:233-242 Pubmed
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 275 positions long. The average length of non-redundant hits to the model is 216. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ORSL [Requires Repbase registration]