MSTD (DF0001045)

MSTD Long Terminal Repeat for ERVL-MaLR retrotransposon

Description

MSTD has 5 bp TSDs, and it represents an intermediate subfamily between MSTC and MLT1A LTRs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 396 positions long. The average length of non-redundant hits to the model is 297.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 7542 171981 7044 140730

External Database Links

  • Repbase : MSTD [Requires Repbase registration]