MSTB (DF0001042)
MSTB Long Terminal Repeat for ERVL-MaLR retrotransposon
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
MSTB has 5 bp TSDs. This is an intermediate subfamily between MSTA and MSTB1. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
References
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Human P1-450 gene sequence and correlation of mRNA with genetic differences in benzo[a]pyrene metabolism.
Jaiswal AK, Gonzalez FJ, Nebert DW;
Nucleic Acids Res 1985;13:4503-4520 Pubmed -
The genomic organisation and nucleotide sequence of the HLA-SB(DP) alpha gene.
Lawrance SK, Das HK, Pan J, Weissman SM;
Nucleic Acids Res 1985;13:7515-7528 Pubmed -
A family of short, interspersed repeats is associated with tandemly repetitive DNA in the human genome.
Mermer B, Colb M, Krontiris TG;
Proc Natl Acad Sci U S A 1987;84:3320-3324 Pubmed -
Medium reiteration frequency repetitive sequences in the human genome.
Kaplan DJ, Jurka J, Solus JF, Duncan CH;
Nucleic Acids Res 1991;19:4731-4738 Pubmed -
Identification of a new, abundant superfamily of mammalian LTR-transposons.
Smit AF;
Nucleic Acids Res 1993;21:1863-1872 Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | ERVL-MaLR | Article |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 426 positions long. The average length of non-redundant hits to the model is 360.1. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Homo sapiens | 7019 | 145482 | 6812 | 111896 |
External Database Links
- Repbase : MSTB [Requires Repbase registration]