MLT1O (DF0001026)

MLT1O Long Terminal Repeat for ERVL-MaLR retrotransposon

Description

MLT10 has 5 bp TSDs. There are ~1000 about copies in the reconstructed Laurasiatherian genome (with substitution levels of ~35%). Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 542 positions long. The average length of non-redundant hits to the model is 322.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 392 452 354 401
Homo sapiens 6915 17459 4807 9145

External Database Links

None recorded for this entry