MLT1K (DF0001022)

MLT1K Long Terminal Repeat for ERVL-MaLR retrotransposon

Description

MLT1K has 5 bp TSDs. Reconstruction expanded upon, and replaces MER98. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 595 positions long. The average length of non-redundant hits to the model is 325.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 3870 5125 2268 2685
Homo sapiens 17690 36717 13852 23536

External Database Links

  • Repbase : MLT1K [Requires Repbase registration]