MLT1F (DF0001008)

MLT1F Long Terminal Repeat for ERVL-MaLR retrotransposon

Description

MLT1F (Mammalian LTR Transposon) has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).

References

  1. Identification of a new, abundant superfamily of mammalian LTR-transposons.
    Smit AF;
    Nucleic Acids Res 1993;21:1863-1872 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 548 positions long. The average length of non-redundant hits to the model is 354.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1797 8837 1320 4397
Homo sapiens 3794 68199 3528 39642

External Database Links

  • Repbase : MLT1F [Requires Repbase registration]