MLT1D (DF0001004)

MLT1D Long Terminal Repeat for ERVL-MaLR retrotransposon

Description

MLT1D (Mammalian LTR Transposon) has 5 bp TSDs, and it an intermediate subfamily between MLT1C and MLT1E2. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).

References

  1. Identification and characterization of new human medium reiteration frequency repeats.
    Jurka J, Kaplan DJ, Duncan CH, Walichiewicz J, Milosavljevic A, Murali G, Solus JF;
    Nucleic Acids Res 1993;21:1273-1279. Pubmed

  2. Identification of a new, abundant superfamily of mammalian LTR-transposons.
    Smit AF;
    Nucleic Acids Res 1993;21:1863-1872 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 505 positions long. The average length of non-redundant hits to the model is 357.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 7051 21974 5363 10734
Homo sapiens 13826 111716 13122 77795

External Database Links

  • Repbase : MLT1D [Requires Repbase registration]