MamTip3 (DF0000999)

hAT-Tip100 DNA transposon (with LTR insert), MamTip3 subfamily

Description

MamTip3 has 8bp TSDs, and has termini that are similar to other hAT-Tip100 elements in Xenopus, hydra, as well as MER96B and FordPrefect in human. However, an internal region of MamTip3 has convincing similarity to the U5 region of LTR85a/b/c. These LTRs are probably associated with a Gypsy retrotransposon. This indicates an ancient insertion or recombination event between a DNA transposon and a retrotransposon.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Tip100

Hit Statistics

The model is 500 positions long. The average length of non-redundant hits to the model is 258.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 184 221 118 135
Homo sapiens 1127 1951 835 1192

External Database Links

None recorded for this entry