hAT-Tip100 DNA transposon (with LTR insert), MamTip3 subfamily
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MamTip3 has 8bp TSDs, and has termini that are similar to other hAT-Tip100 elements in Xenopus, hydra, as well as MER96B and FordPrefect in human. However, an internal region of MamTip3 has convincing similarity to the U5 region of LTR85a/b/c. These LTRs are probably associated with a Gypsy retrotransposon. This indicates an ancient insertion or recombination event between a DNA transposon and a retrotransposon.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 500 positions long. The average length of non-redundant hits to the model is 258.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
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