MamSINE1 (DF0000996)

MamSINE1 (Mammalian Short INterspersed Element 1), tRNA-derived

Description

MamSINE1 is a modest copy number SINE in mammals that captured a tRNA-Ile at the 5' end, and that remains remarkably similar over the full length of the tRNA.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily tRNA Article

Hit Statistics

The model is 290 positions long. The average length of non-redundant hits to the model is 195. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 523 597 260 288
Homo sapiens 5556 6536 2307 2578

External Database Links

  • Repbase : MamSINE1 [Requires Repbase registration]