MamRep488 (DF0000993)

Putative hAT DNA transposon, MamRep488 subfamily

Description

MamRep488 has 8bp TSDs like hAT DNA transposons, but no consensus as found for Charlie elements. The terminal 29bp are similar to a hAT-Tip100 element in Zea mays (ZhAT5_ZM).

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Tip100

Hit Statistics

The model is 219 positions long. The average length of non-redundant hits to the model is 166.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 59 105 20 33
Homo sapiens 685 2042 450 1027

External Database Links

  • Repbase : MamRep488 [Requires Repbase registration]