Putative hAT DNA transposon, MamRep488 subfamily
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
MamRep488 has 8bp TSDs like hAT DNA transposons, but no consensus as found for Charlie elements. The terminal 29bp are similar to a hAT-Tip100 element in Zea mays (ZhAT5_ZM).
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 219 positions long. The average length of non-redundant hits to the model is 166.8. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : MamRep488 [Requires Repbase registration]