MamRep38 (DF0000990)

Possible hAT DNA transposon, MamRep38 subfamily

Description

MamRep38 has 15bp TIRs, and 8bp TSDs (not obviously similar to Charlie TSD bias).

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT

Hit Statistics

The model is 295 positions long. The average length of non-redundant hits to the model is 216.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 398 499 158 168
Homo sapiens 2035 3600 1702 2185

External Database Links

  • Repbase : MamRep38 [Requires Repbase registration]