MamRep1879 (DF0000988)

Putative hAT DNA transposon, MamRep1879 subfamily

Description

MamRep1879 has 8 bp TSDs, but no clear bias for RRRRYYYY like the MER1 group. Tentatively classified as Tip100 because its first 29 bp are similar to final 29 bp of ZhAT5_ZM.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Tip100?

Note: Uncertain classification.

Hit Statistics

The model is 216 positions long. The average length of non-redundant hits to the model is 169.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 179 210 57 66
Homo sapiens 1677 2512 1177 1538

External Database Links

None recorded for this entry