MamRep1527 (DF0000987)

MamRep1527 -- possible LTR from unknown retrotransposon


Possibly an LTR. TG...CA. There is a hint of 5 bp TSDs, and polyA signal (consensus was inverted from original for this). As yet, no convincing homology to any other transposable element.


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Hit Statistics

The model is 969 positions long. The average length of non-redundant hits to the model is 406.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 211 231 174 190
Homo sapiens 978 1368 890 1218

External Database Links

  • Repbase : MamRep1527 [Requires Repbase registration]