MamRep1527 -- possible LTR from unknown retrotransposon
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Possibly an LTR. TG...CA. There is a hint of 5 bp TSDs, and polyA signal (consensus was inverted from original for this). As yet, no convincing homology to any other transposable element.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 969 positions long. The average length of non-redundant hits to the model is 406.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : MamRep1527 [Requires Repbase registration]