MamRep1151 (DF0000985)

MamRep1151 putative Long Terminal Repeat from unknown retrotransposon

Description

Possibly an LTR, but the 5' end is likely incorrect (e.g. no TSDs have been detected). Roughly 800 copies can be detected in the reconstructed Laurasiatherian ancestor, at a 25% substitution level. MamRep1151 shows unconvincing similarity to both the Zaphod DNA transposon, and the MER51 ERV retrotransposon.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 709 positions long. The average length of non-redundant hits to the model is 383. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 308 408 206 246
Homo sapiens 781 1485 667 1174

External Database Links

None recorded for this entry