MamRep1151 putative Long Terminal Repeat from unknown retrotransposon
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Possibly an LTR, but the 5' end is likely incorrect (e.g. no TSDs have been detected). Roughly 800 copies can be detected in the reconstructed Laurasiatherian ancestor, at a 25% substitution level. MamRep1151 shows unconvincing similarity to both the Zaphod DNA transposon, and the MER51 ERV retrotransposon.
Note: Uncertain classification.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 709 positions long. The average length of non-redundant hits to the model is 383. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
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