Mam_R4 -- Dong-R4 retrotransposon (LINE)
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
This is the first Dong retrotransposon found in tetrapods, originally identified in platypus as Plat_R4. Because closely related sequences are found in Theria (non-monotreme mammals), this has been renamed to Mam_R4. This reconstruction contains all of "ORF2" (roughly pos. 244-3732), although the start condon is unclear. ORF1 is usually absent in Dong elements, and is not evident here.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3809 positions long. The average length of non-redundant hits to the model is 333.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Plat_R4 [Requires Repbase registration]