MamGypLTR2c (Long Terminal Repeat) for Gypsy retrotransposon
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
MamGypLTR2c has 4bp TSDs. The 5' end has not been fully reconstructed, however that end is extended ~140bp farther than the similarly incomplete MamGypLTR2b.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1068 positions long. The average length of non-redundant hits to the model is 392.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : MamGypLTR2c [Requires Repbase registration]