MamGyp-int (DF0000979)
Internal region of a Gypsy retrotransposon, MamGyp-int subfamily
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
This is a partial reconstruction of the internal region of the first Gypsy retrotransposon described in mammals. Associated LTRs are MamGypLTR1 & 2.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | Gypsy | Article |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5102 positions long. The average length of non-redundant hits to the model is 476.3. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 85 | 91 | 66 | 70 |
| Homo sapiens | 583 | 822 | 463 | 638 |
External Database Links
None recorded for this entry