MIRc (Mammalian-wide Interspersed Repeat - variant c)
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
MIRc is a pan-mammalian SINE with a 5' end derived from a tRNA, a central deeply-conserved CORE region (shared with other MIRs), and a 3' terminal ~55bp related to an L2 LINE .
Evolutionary inventions and continuity of CORE-SINEs in mammals.
Gilbert N, Labuda D;
J Mol Biol 2000;298:365-377 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 268 positions long. The average length of non-redundant hits to the model is 175.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : MIRc [Requires Repbase registration]