TcMar-Tigger DNA transposon, Tigger1 subfamily (autonomous)
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Tigger1 has 23 bp TIRs, TSDs are "TA". ORF1: roughly over 425..1789; ORF2: roughly over 1811..2206.
Dense Alu clustering and a potential new member of the NF kappa B family within a 90 kilobase HLA class III segment.
Iris FJ, Bougueleret L, Prieur S, Caterina D, Primas G, Perrot V, Jurka J, Rodriguez-Tome P, Claverie JM, Dausset J;
Nat Genet 1993;3:137-145 Pubmed
Structure of the human CRFB4 gene: comparison with its IFNAR neighbor.
Lutfalla G, McInnis MG, Antonarakis SE, UzÃ© G;
J Mol Evol 1995;41:338-344 Pubmed
Tiggers and DNA transposon fossils in the human genome.
Smit AF, Riggs AD;
Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2418 positions long. The average length of non-redundant hits to the model is 922.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : TIGGER1 [Requires Repbase registration]