MER5C1 (DF0000880)

hAT-Charlie DNA transposon, MER5C1 subfamily (non-autonomous)


MER5C1 is closely related to MER5C, except for an internal deletion. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.


Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 263 positions long. The average length of non-redundant hits to the model is 186.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 180 458 82 187
Homo sapiens 758 2898 640 2194

External Database Links

  • Repbase : MER5C1 [Requires Repbase registration]