MER52D (DF0000858)

MER52D Long Terminal Repeat for ERV1 endogenous retrovirus

Description

MER52D is the longest LTR variant associated with MER52-int. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 2123 positions long. The average length of non-redundant hits to the model is 689.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 1063 13717 888 9748

External Database Links

  • Repbase : MER52D [Requires Repbase registration]