Tigger4b (DF0000846)
TcMar-Tigger DNA transposon, Tigger4b subfamily (non-autonomous)
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Tigger4b is an adjustment of ZOMBI_B, with a >100bp internal segment of ZOMBI_B removed. This has 26 bp TIRs, and "TA" TSDs.
Synonyms: ZOMBI_B
References
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Tiggers and DNA transposon fossils in the human genome.
Smit AF, Riggs AD;
Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed -
Identification of new medium reiteration frequency repeats in the genomes of Primates, Rodentia and Lagomorpha.
Jurka J, Kapitonov VV, Klonowski P, Walichiewicz J, Smit AF;
Genetica ;98:235-47 Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | TcMar-Tigger |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 361 positions long. The average length of non-redundant hits to the model is 259.7. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Homo sapiens | 2120 | 12164 | 1977 | 8723 |
External Database Links
- Repbase : ZOMBI_B [Requires Repbase registration]