TcMar-Tigger DNA transposon, Tigger3 subfamily (autonomous)
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Tigger3 was previously known as GOLEM. It has 23 bp TIRs and "TA" TSDs, and has a transposase related to Tigger1.
Two human repetitive DNA elements: a new interspersed repeat found in the factor IX gene, and a satellite 11 tandem repeat sequence.
Drinkwater RD, Burgoyne LA, Skinner JD;
Nucleic Acids Res 1986;14:9541-9541 Pubmed
Novel short interspersed repeat in human DNA.
Kaplan DJ, Duncan CH;
Nucleic Acids Res 1990;18:192-192 Pubmed
Medium reiteration frequency repetitive sequences in the human genome.
Kaplan DJ, Jurka J, Solus JF, Duncan CH;
Nucleic Acids Res 1991;19:4731-4738 Pubmed
CCAAT displacement protein as a repressor of the myelomonocytic-specific gp91-phox gene promoter.
Skalnik DG, Strauss EC, Orkin SH;
J Biol Chem 1991;266:16736-16744 Pubmed
Paucity of novel short interspersed repetitive element (SINE) families in human DNA and isolation of a novel MER repeat.
Rubin CM, Leeflang EP, Rinehart FP, Schmid CW;
Genomics 1993;18:322-328 Pubmed
Identification and characterization of new human medium reiteration frequency repeats.
Jurka J, Kaplan DJ, Duncan CH, Walichiewicz J, Milosavljevic A, Murali G, Solus JF;
Nucleic Acids Res 1993;21:1273-1279. Pubmed
Tiggers and DNA transposon fossils in the human genome.
Smit AF, Riggs AD;
Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3029 positions long. The average length of non-redundant hits to the model is 472.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : GOLEM [Requires Repbase registration]