Tigger14a (DF0000827)

TcMar-Tigger DNA transposon, Tigger14a subfamily

Description

Tigger14a has imperfect 25 bp TIRs, and shows subsequence similarity to Tigger15a and Tigger13a.

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 324 positions long. The average length of non-redundant hits to the model is 200.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 292 313 148 153
Homo sapiens 2101 2698 1106 1292

External Database Links