THE1C (DF0000819)

THE1C Long Terminal Repeat for ERVL-MaLR endogenous retrovirus


An LTR of the THE1C retrovirus-like MaLR element. Has 5 bp TSDs. This subfamily is an intermediate between THE1B and MSTA, and is 90% similar to THE1B over the entire length.


  1. Non-Alu family interspersed repeats in human DNA and their transcriptional activity.
    Sun L, Paulson KE, Schmid CW, Kadyk L, Leinwand L;
    Nucleic Acids Res 1984;12:2669-2690 Pubmed

  2. A transposon-like element in human DNA.
    Paulson KE, Deka N, Schmid CW, Misra R, Schindler CW, Rush MG, Kadyk L, Leinwand L;
    Nature 1985;316:359-361 Pubmed

  3. Identification of a new, abundant superfamily of mammalian LTR-transposons.
    Smit AF;
    Nucleic Acids Res 1993;21:1863-1872 Pubmed


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 375 positions long. The average length of non-redundant hits to the model is 347.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 7164 113924 7092 91078

External Database Links

  • Repbase : THE1C [Requires Repbase registration]