THE1B (DF0000818)

THE1B Long Terminal Repeat for ERVL-MaLR endogenous retrovirus

Description

An LTR of the THE1B retrovirus-like MaLR element. Has 5 bp TSDs. This subfamily is an intermediate between THE1A and THE1C, and is 90% similar to both over the entire length.

References

  1. Non-Alu family interspersed repeats in human DNA and their transcriptional activity.
    Sun L, Paulson KE, Schmid CW, Kadyk L, Leinwand L;
    Nucleic Acids Res 1984;12:2669-2690 Pubmed

  2. A transposon-like element in human DNA.
    Paulson KE, Deka N, Schmid CW, Misra R, Schindler CW, Rush MG, Kadyk L, Leinwand L;
    Nature 1985;316:359-361 Pubmed

  3. Identification of a new, abundant superfamily of mammalian LTR-transposons.
    Smit AF;
    Nucleic Acids Res 1993;21:1863-1872 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 364 positions long. The average length of non-redundant hits to the model is 344.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 17964 106224 17832 87294

External Database Links

  • Repbase : THE1B [Requires Repbase registration]