L1PA12_5end (DF0000778)

5' end of L1 retrotransposon, L1PA12_5end subfamily


5' end of LINE elements with L1PA12-14 subfamily 3' ends (mostly PA14). ORF1 starts at bp 2461. The UTR region from 583 to 2072 contains a variable number of imperfect ~275 bp tandem repeat units.

Synonyms: L1PA12_5


Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 3072 positions long. The average length of non-redundant hits to the model is 741.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 2041 60195 1976 52036

External Database Links

  • Repbase : L1PA12_5 [Requires Repbase registration]