5' end of L1 retrotransposon, L1PA12_5end subfamily
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5' end of LINE elements with L1PA12-14 subfamily 3' ends (mostly PA14). ORF1 starts at bp 2461. The UTR region from 583 to 2072 contains a variable number of imperfect ~275 bp tandem repeat units.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3072 positions long. The average length of non-redundant hits to the model is 741.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1PA12_5 [Requires Repbase registration]