L1MEd_5end (DF0000777)

5' end of L1 retrotransposon, L1MEd_5end subfamily

Description

5' end of LINE elements with L1ME subfamily 3' ends ORF1 starts at pos. 682. ORF 684-1640 encodes a gag protein similar to those of other L1ME elements. ORF2 starts at position 2075 (standard first 150 nucleotides included).

Synonyms: L1MED_5

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 2224 positions long. The average length of non-redundant hits to the model is 500.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 3155 83685 1665 49509
Homo sapiens 11029 138433 9199 114152

External Database Links

  • Repbase : L1MED_5 [Requires Repbase registration]