MER44A (DF0000767)

TcMar-Tigger DNA transposon, MER44A subfamily (non-autonomous)

Description

MER44A is an internal deletion of the Tigger7 DNA transposon. Has 23 bp TIRs, TSD is "TA". Intitially reported in the opposite orientation. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

References

  1. Tiggers and DNA transposon fossils in the human genome.
    Smit AF, Riggs AD;
    Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 339 positions long. The average length of non-redundant hits to the model is 263.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 1865 12340 1736 8747

External Database Links

  • Repbase : MER44A [Requires Repbase registration]