MER39B (DF0000759)

MER39B Long Terminal Repeat for ERV1 endogenous retrovirus

Description

MER39B has 4 bp TSDs. It is a variant of MER39; both are members of a closely interrelated group of LTRs including MER21, MER34, LTR29, LTR48 and LTR49. Original orientation has been changed. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 653 positions long. The average length of non-redundant hits to the model is 426.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 1014 10738 966 7570

External Database Links

  • Repbase : MER39B [Requires Repbase registration]