MER34B (DF0000751)

MER34B Long Terminal Repeat for ERV1 endogenous retrovirus

Description

70% similar to MER34 over roughly the entire length. Possibly present in rodents. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

References

  1. Repetitive DNA in and around translocation breakpoints of the Philadelphia chromosome.
    Tóth G, Jurka J;
    Gene 1994;140:285-288 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 565 positions long. The average length of non-redundant hits to the model is 353.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 195 775 168 492
Homo sapiens 441 8174 395 4949

External Database Links

  • Repbase : MER34B [Requires Repbase registration]