MER2 (DF0000736)

TcMar-Tigger DNA transposon, MER2 subfamily (non-autonomous)

Description

24 bp TIRs. TSD: TA. Originally identified in the opposite orientation. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

References

  1. Recombination in simian virus 40-infected cells. Structure of naturally arising variants ev-2114, ev-2102, and ev-1110.
    Sheflin L, Celeste A, Woodworth-Gutai M;
    J Biol Chem 1983;258:14315-14321 Pubmed

  2. Novel families of interspersed repetitive elements from the human genome.
    Jurka J;
    Nucleic Acids Res 1990;18:137-141. Pubmed

  3. Tiggers and DNA transposon fossils in the human genome.
    Smit AF, Riggs AD;
    Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 345 positions long. The average length of non-redundant hits to the model is 253.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 9675 13399 7466 9504
Homo sapiens 5918 15666 5692 11763

External Database Links

  • Repbase : MER2 [Requires Repbase registration]