MER1B (DF0000735)

hAT-Charlie DNA transposon, MER1B subfamily (non-autonomous)

Description

15 bp TIR, 8 bp TSDs. Both MER1A and B are deletion products of CHARLIE3. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

References

  1. Novel families of interspersed repetitive elements from the human genome.
    Jurka J;
    Nucleic Acids Res 1990;18:137-141. Pubmed

  2. Tiggers and DNA transposon fossils in the human genome.
    Smit AF, Riggs AD;
    Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 339 positions long. The average length of non-redundant hits to the model is 299.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 4810 18145 4593 12200

External Database Links

  • Repbase : MER1B [Requires Repbase registration]