MER119 (DF0000716)

hAT-Charlie DNA transposon, MER119 subfamily (non-autonomous)

Description

Has 15 bp TIRs and 8 bp TSDs (preferred NTCTAGAN). Contains a coding fragment relic similar to the Charlie3 transposase. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 583 positions long. The average length of non-redundant hits to the model is 319.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 377 510 284 354
Homo sapiens 710 1287 665 1115

External Database Links

  • Repbase : MER119 [Requires Repbase registration]