MER110-int (DF0000707)
Internal region of ERV1 endogenous retrovirus, MER110-int subfamily
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Associated with MER110 or MER110A LTRs. This reconstruction may miss a large fragment towards the 5' end. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.
Synonyms: MER110I
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | ERV1 | Article |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4647 positions long. The average length of non-redundant hits to the model is 629.1. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 157 | 4546 | 90 | 1863 |
| Homo sapiens | 350 | 4728 | 307 | 2700 |
External Database Links
- Repbase : MER110I [Requires Repbase registration]