hAT-Charlie DNA transposon, MER107 subfamily
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Terminal inverted repeats identical to those of MER30. Terminal 18 bases match those of Charlie12 & MER30. Quite a few of the copies show the typical 8 bp TSDs with a bias to NTCTAGAN, but many others do not show TSDs at all -- an atypical Charlie element. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 200 positions long. The average length of non-redundant hits to the model is 179.6. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : MER107 [Requires Repbase registration]