MER107 (DF0000704)

hAT-Charlie DNA transposon, MER107 subfamily

Description

Terminal inverted repeats identical to those of MER30. Terminal 18 bases match those of Charlie12 & MER30. Quite a few of the copies show the typical 8 bp TSDs with a bias to NTCTAGAN, but many others do not show TSDs at all -- an atypical Charlie element. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 200 positions long. The average length of non-redundant hits to the model is 179.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 260 309 233 277

External Database Links

  • Repbase : MER107 [Requires Repbase registration]