MER106A (DF0000703)

hAT-Charlie DNA transposon, MER106A subfamily

Description

The original MER106 element was unclassified. MER106A has been classified as a hAT-like DNA transposon based on identification of 14 bp imperfect, terminal inverted repeats, and 8 bp target site duplications (with a preference of NTCTAGAN). MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

Synonyms: MER106

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 236 positions long. The average length of non-redundant hits to the model is 202.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 236 315 116 149
Homo sapiens 846 1498 779 1289

External Database Links

  • Repbase : MER106 [Requires Repbase registration]