hAT-Charlie DNA transposon, MER105 subfamily (non-autonomous)
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Classification based on terminal similarities to Repbase hAT-2_PMo and AeBuster3; and on the identity of the first 15 bp to the last 15 bp of Charlie6. TSD is unclear. MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 203 positions long. The average length of non-redundant hits to the model is 174.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : MER105 [Requires Repbase registration]