MER104 (DF0000701)

TcMar-Tc2 DNA transposon, MER104 subfamily (non-autonomous)

Description

Consensus inverted from initial report. Originally incorrectly classified as a hAT-like DNA transposon. TSD: TA. 30 bp TIRs. HSTC2 is a prototype reconstruction of an autonomous transposon involved in propagation of MER104. MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tc2

Hit Statistics

The model is 181 positions long. The average length of non-redundant hits to the model is 152.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 614 835 208 242
Homo sapiens 2800 5630 1955 3170

External Database Links

  • Repbase : MER104 [Requires Repbase registration]