MER102b (DF0000697)

hAT-Charlie DNA transposon, MER102b subfamily

Description

Present in Sus scrofa. Originally classified as a putative DNA transposon based on a weak nucleotide identity to MER58B. Final classification as a hAT DNA transposon is based on identification of 15 bp TIRs and 8 bp TSDs with MER1-like NTCTAGAN bias. MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.

Synonyms: CHARLIE8A

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 341 positions long. The average length of non-redundant hits to the model is 241.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1084 2630 608 1217
Homo sapiens 4825 16110 3918 10767

External Database Links

  • Repbase : CHARLIE8A [Requires Repbase registration]