This model represents a noncoding RNA gene. Some ncRNA genes have transformed into, or become assimilated into transposons. Others occur in sufficient copy number that ab initio repeat finders may classify them as repetitive elements. This entry is used to correctly identify the gene and its pseudogenes and prevent misannotation.
hY5 Y scRNA gene / pseudogene
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Human hY5 scRNA gene and related pseudogenes. While this ncRNA was originally identified as "4.5S RNA", GB accession K01106 , the human Y5 scRNA source is GB accession NR_001571.2.
Nucleotide sequence of 4.5S RNA (C8 or hY5) from HeLa cells.
Kato N, Hoshino H, Harada F;
Biochem Biophys Res Commun 1982;108:363-370 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 84 positions long. The average length of non-redundant hits to the model is 72.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : RRNA45 [Requires Repbase registration]