HY5 (DF0000633)

This model represents a noncoding RNA gene. Some ncRNA genes have transformed into, or become assimilated into transposons. Others occur in sufficient copy number that ab initio repeat finders may classify them as repetitive elements. This entry is used to correctly identify the gene and its pseudogenes and prevent misannotation.

hY5 Y scRNA gene / pseudogene

Description

Human hY5 scRNA gene and related pseudogenes. While this ncRNA was originally identified as "4.5S RNA", GB accession K01106 [1], the human Y5 scRNA source is GB accession NR_001571.2.

Synonyms: RRNA45

References

  1. Nucleotide sequence of 4.5S RNA (C8 or hY5) from HeLa cells.
    Kato N, Hoshino H, Harada F;
    Biochem Biophys Res Commun 1982;108:363-370 Pubmed

Classification

Accession Name Wikipedia
Type ncRNA Gene Article
Class scRNA
Superfamily HY5 Article

Hit Statistics

The model is 84 positions long. The average length of non-redundant hits to the model is 72.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1 1 1 1
Homo sapiens 15 25 11 19
Danio rerio 1 3 0 0

External Database Links

  • Repbase : RRNA45 [Requires Repbase registration]