This model represents a noncoding RNA gene. Some ncRNA genes have transformed into, or become assimilated into transposons. Others occur in sufficient copy number that ab initio repeat finders may classify them as repetitive elements. This entry is used to correctly identify the gene and its pseudogenes and prevent misannotation.
hY1 Y scRNA gene / pseudogene
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Human HY1 scRNA gene and related pseudogenes. Source: Genbank accession: V00584:39-150.
Genes for two small cytoplasmic Ro RNAs are adjacent and appear to be single-copy in the human genome.
Wolin SL, Steitz JA;
Cell 1983;32:735-744 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 119 positions long. The average length of non-redundant hits to the model is 111.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HY1 [Requires Repbase registration]