HY1 (DF0000630)

This model represents a noncoding RNA gene. Some ncRNA genes have transformed into, or become assimilated into transposons. Others occur in sufficient copy number that ab initio repeat finders may classify them as repetitive elements. This entry is used to correctly identify the gene and its pseudogenes and prevent misannotation.

hY1 Y scRNA gene / pseudogene

Description

Human HY1 scRNA gene and related pseudogenes. Source: Genbank accession: V00584:39-150.

References

  1. Genes for two small cytoplasmic Ro RNAs are adjacent and appear to be single-copy in the human genome.
    Wolin SL, Steitz JA;
    Cell 1983;32:735-744 Pubmed

Classification

Accession Name Wikipedia
Type ncRNA Gene Article
Class scRNA
Superfamily HY1 Article

Hit Statistics

The model is 119 positions long. The average length of non-redundant hits to the model is 111.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 26 45 20 34
Homo sapiens 350 976 327 645
Danio rerio 1 1 1 1

External Database Links

  • Repbase : HY1 [Requires Repbase registration]