MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Resembles an internal deletion product of Mariner1; has 37 bp TIRs and a TA target site.
Tiggers and DNA transposon fossils in the human genome.
Smit AF, Riggs AD;
Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 80 positions long. The average length of non-redundant hits to the model is 73.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : MADE1 [Requires Repbase registration]