MADE1 (DF0000629)

MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon

Description

Resembles an internal deletion product of Mariner1; has 37 bp TIRs and a TA target site.

References

  1. Tiggers and DNA transposon fossils in the human genome.
    Smit AF, Riggs AD;
    Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Mariner

Hit Statistics

The model is 80 positions long. The average length of non-redundant hits to the model is 73.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 5415 18365 4056 10928

External Database Links

  • Repbase : MADE1 [Requires Repbase registration]