LFSINE_Vert (Lobe-finned Fishes SINE), tRNA-derived
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Differences with LFSINE in Coelacanth are very limited. 
A distal enhancer and an ultraconserved exon are derived from a novel retroposon.
Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D;
Nature 2006;441:87-90 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 459 positions long. The average length of non-redundant hits to the model is 213.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : LFSINE_Vert [Requires Repbase registration]