LFSINE_Vert (DF0000368)

LFSINE_Vert (Lobe-finned Fishes SINE), tRNA-derived

Description

Differences with LFSINE in Coelacanth are very limited. [1]

References

  1. A distal enhancer and an ultraconserved exon are derived from a novel retroposon.
    Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D;
    Nature 2006;441:87-90 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily tRNA Article

Hit Statistics

The model is 459 positions long. The average length of non-redundant hits to the model is 213.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 341 346 213 217
Homo sapiens 1145 1168 575 587

External Database Links

  • Repbase : LFSINE_Vert [Requires Repbase registration]