L4_C_Mam (DF0000366)

RTE-X retrotransposon, L4_B_Mam subfamily

Description

L4_C_Mam is one of three ~80% similar L4 subfamilies. The presumes coding regions: ORF1 (~21-1631), and ORF2 (~1632-4955). These proteins are similar to those of RTEX-1_ACar in lizards and L5 in ancient mammals. The substitution level found in the Laurasiatherian reconstruction is ~40%.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily RTE-X

Hit Statistics

The model is 5138 positions long. The average length of non-redundant hits to the model is 352.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 996 1697 538 846
Homo sapiens 5112 13167 3516 8311

External Database Links

None recorded for this entry