RTE-X retrotransposon, L4_B_Mam subfamily
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L4_B_Mam is one of three ~80% similar L4 subfamilies. ORF1 (<1-1440) is not fully reconstructed, though ORF2 (~1441-4755) may be. These proteins are similar to those of RTEX-1_ACar in lizards and L5 in ancient mammals. The substitution level found in the Laurasiatherian reconstruction is ~40%.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4939 positions long. The average length of non-redundant hits to the model is 340.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
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