L4_B_Mam (DF0000365)

RTE-X retrotransposon, L4_B_Mam subfamily


L4_B_Mam is one of three ~80% similar L4 subfamilies. ORF1 (<1-1440) is not fully reconstructed, though ORF2 (~1441-4755) may be. These proteins are similar to those of RTEX-1_ACar in lizards and L5 in ancient mammals. The substitution level found in the Laurasiatherian reconstruction is ~40%.


Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily RTE-X

Hit Statistics

The model is 4939 positions long. The average length of non-redundant hits to the model is 340.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 576 1582 303 791
Homo sapiens 3318 13590 2261 8664

External Database Links

None recorded for this entry