L4_A_Mam (DF0000364)

RTE-X retrotransposon, L4_A_Mam subfamily

Description

L4_A_Mam is one of three ~80% similar L4 subfamilies. ORF1 (3-1490) is not fully reconstructed, though ORF2 (~1491-4805) may be. These proteins similar to those of RTEX-1_ACar in lizards and L5 in ancient mammals. The substitution level found in the Laurasiatherian reconstruction is ~37%.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily RTE-X

Hit Statistics

The model is 4990 positions long. The average length of non-redundant hits to the model is 370.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1101 1796 611 910
Homo sapiens 5336 13122 3967 8415

External Database Links

None recorded for this entry