CR1 (Chicken Repeat 1) retrotransposon, L3 subfamily
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L3 belongs to the CR1 clade of LINE retrotransposons present in mammals, marsupials, birds, reptiles, fishes and insects. L3 is composed of ancient and diverse subfamilies. The ORFs from the ancient, autonomous L3 have been partially reconstructed: ORF1 (~24-1332) and ORF2 (~1611-4405).
The esterase and PHD domains in CR1-like non-LTR retrotransposons.
Kapitonov VV, Jurka J;
Mol Biol Evol 2003;20:38-46 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4099 positions long. The average length of non-redundant hits to the model is 334.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L3 [Requires Repbase registration]