5' end of L1 retrotransposon, L1PBa_5end subfamily
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5' end of LINE elements with L1PB1_3end subfamily 3' ends, comprising the 5'UTR and part of the ORF1 region.
Interspersed repetitive DNA sequences of the human genome: are they transposons?
Jagadeeswaran P, Biro PA, Tuan D, Pan J, Forget BG, Weissman SM;
Prog Clin Biol Res 1982;103:29-35 Pubmed
L1 repeat elements in the human epsilon-G gamma-globin gene intergenic region: sequence analysis and concerted evolution within this family.
Rogan PK, Pan J, Weissman SM;
Mol Biol Evol 1987;4:327-342 Pubmed
Identification and characterization of new human medium reiteration frequency repeats.
Jurka J, Kaplan DJ, Duncan CH, Walichiewicz J, Milosavljevic A, Murali G, Solus JF;
Nucleic Acids Res 1993;21:1273-1279. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2971 positions long. The average length of non-redundant hits to the model is 941.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1PBA_5 [Requires Repbase registration]