L1PA17_5end (DF0000338)

5' end of L1 retrotransposon, L1PA17_5end subfamily


L1PA17_5end represents the 5' end of LINE1 elements associated with L1PA16, L1PA17 or L1PB4 3' end. Though spread through the genome in early primate evolution, the average divergence of copies to the consensus is 22%, reflecting the mixture of subfamilies and the high CpG content.

Synonyms: L1PA17_5


Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 1734 positions long. The average length of non-redundant hits to the model is 522.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 747 15541 638 9433

External Database Links