5' end of L1 retrotransposon, L1PA17_5end subfamily
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L1PA17_5end represents the 5' end of LINE1 elements associated with L1PA16, L1PA17 or L1PB4 3' end. Though spread through the genome in early primate evolution, the average divergence of copies to the consensus is 22%, reflecting the mixture of subfamilies and the high CpG content.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1734 positions long. The average length of non-redundant hits to the model is 522.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|